Same error on almost all WUs

Message boards : Number crunching : Same error on almost all WUs

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JohnDK
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Message 104876 - Posted: 17 Feb 2022, 20:28:25 UTC

I'm getting the same error on almost WUs

<message>
process exited with code 1 (0x1, -255)</message>
<stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_x86_64-pc-linux-gnu @rb_02_16_213031_208962_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -jumps:pairing_file t000_.fasta.bbcontacts.jumps -jumps:random_sheets 3 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_02_16_213031_208962_ab_t000__robetta.zip -frag3 rb_02_16_213031_208962_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_16_213031_208962_ab_t000__robetta.200.8mers.index.gz -fragB rb_02_16_213031_208962_ab_t000__robetta.200.7mers.index.gz -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3475861
Using database: database_357d5d93529_n_methyl/minirosetta_database

[ ERROR ]: Caught exception:


File: src/core/pack/dunbrack/SingleResidueDunbrackLibrary.hh:306
chi angle must be between -180 and 180: -nan

https://boinc.bakerlab.org/rosetta/results.php?hostid=6178331&offset=0&show_names=0&state=6&appid=
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Profile Grant (SSSF)

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Message 104911 - Posted: 18 Feb 2022, 7:24:47 UTC - in response to Message 104876.  

I'm getting the same error on almost WUs

<message>
process exited with code 1 (0x1, -255)</message>
<stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_x86_64-pc-linux-gnu @rb_02_16_213031_208962_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -jumps:pairing_file t000_.fasta.bbcontacts.jumps -jumps:random_sheets 3 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_02_16_213031_208962_ab_t000__robetta.zip -frag3 rb_02_16_213031_208962_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_16_213031_208962_ab_t000__robetta.200.8mers.index.gz -fragB rb_02_16_213031_208962_ab_t000__robetta.200.7mers.index.gz -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3475861
Using database: database_357d5d93529_n_methyl/minirosetta_database

[ ERROR ]: Caught exception:


File: src/core/pack/dunbrack/SingleResidueDunbrackLibrary.hh:306
chi angle must be between -180 and 180: -nan

https://boinc.bakerlab.org/rosetta/results.php?hostid=6178331&offset=0&show_names=0&state=6&appid=
I would reboot that system.
If there are still issues, then Reset project.
Grant
Darwin NT
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Profile Grant (SSSF)

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Message 104921 - Posted: 18 Feb 2022, 9:10:58 UTC
Last modified: 18 Feb 2022, 9:13:59 UTC

Or maybe not.

It looks like the same error occurred with that batch of RB Tasks for all those running Linux (yet to find Win system running one of them).
Then of course there are all the other Tasks that appear to be erroring out on Win but OK on Linux....


EDIT- looks like some WIn systems had issues with them as well.




So i'd leave your system alone.
Grant
Darwin NT
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tullio

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Message 104922 - Posted: 18 Feb 2022, 9:50:33 UTC - in response to Message 104921.  

All 4.20 tasks have failed on my Windows 11 PC and I am still getting them. Rosetta python runs fine.
Tullio
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JohnDK
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Message 104947 - Posted: 18 Feb 2022, 17:32:31 UTC - in response to Message 104921.  

Or maybe not.

It looks like the same error occurred with that batch of RB Tasks for all those running Linux (yet to find Win system running one of them).
Then of course there are all the other Tasks that appear to be erroring out on Win but OK on Linux....


EDIT- looks like some WIn systems had issues with them as well.




So i'd leave your system alone.

Yes don't think it's my host with the problem, some of those tasks does validate with others but some don't. Also, with the later work I been getting, things runs OK.
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Message boards : Number crunching : Same error on almost all WUs



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