Report Problems with Rosetta Version 5.07
Message boards : Number crunching : Report Problems with Rosetta Version 5.07
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 arminiusSend message Joined: 23 Sep 05 Posts: 8 Credit: 805,403 RAC: 0 |
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BennyRop Send message Joined: 17 Dec 05 Posts: 555 Credit: 140,800 RAC: 0 |
https://boinc.bakerlab.org/rosetta/result.php?resultid=18872518 Swap space 1692.22 MB Total disk space 29.29 GB Free Disk Space 8.53 GB --- Use no more than 10 GB disk space Leave at least 0.01 GB disk space free Use no more than 50% of total disk space Write to disk at most every 60 seconds Use no more than 75% of total virtual memory ---- Generally, when I look at the memory usage on the machine itself, Rosetta is only claiming to use up around 20 megs. None of the partitions have less than 8 gigs free space - so did that WU really eat up the 8.52 gigs of HD space on the C: partition before erroring out? |
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BennyRop Send message Joined: 17 Dec 05 Posts: 555 Credit: 140,800 RAC: 0 |
5/2/2006 5:40:48 PM|rosetta@home|Aborting result JUMPTEST_CLOSECHAINBREAKS_1tul__469_2429_0: exceeded disk limit: 100308693.000000 > 100000000.000000 5/2/2006 5:40:48 PM|rosetta@home|Unrecoverable error for result JUMPTEST_CLOSECHAINBREAKS_1tul__469_2429_0 (Maximum disk usage exceeded) From the message log, I see that it's whining about going over 100 megs. Where did it get this value from, since I can't see that representing the settings I've chosen for Boinc&Rosetta. |
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Jimi@0wned.org.uk Send message Joined: 10 Mar 06 Posts: 29 Credit: 335,252 RAC: 0 |
2 WUs with coding errors? WU 15827716 <core_client_version>5.2.13</core_client_version> <message>Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # random seed: 1048865 # cpu_run_time_pref: 14400 # cpu_run_time_pref: 14400 ERROR:: Exit at: .hbonds.cc line:293 </stderr_txt> WU 15757279 <core_client_version>5.2.13</core_client_version> <message>Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # random seed: 1767551 # cpu_run_time_pref: 14400 # cpu_run_time_pref: 14400 |
Trog Dog Send message Joined: 25 Nov 05 Posts: 129 Credit: 57,345 RAC: 0 |
Yep, its a p4 - number of cpus is only reported as 1 so it doesn't even support hyper threading.  
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Jon C Melusky Send message Joined: 29 Nov 05 Posts: 12 Credit: 191,715 RAC: 22 |
Hi, I am running 5 BOINC projects, but here are the Rosetta lines of info. Looks like Rosetta has not worked in 4 days. Or so says the BOINC manager statistics tab. 5/5/2006 5:00:53 AM||Starting BOINC client version 5.2.13 for windows_intelx86 5/5/2006 5:00:53 AM||libcurl/7.14.0 OpenSSL/0.9.8 zlib/1.2.3 5/5/2006 5:00:53 AM||Data directory: C:Program FilesBOINC 5/5/2006 5:00:54 AM||Processor: 1 GenuineIntel Intel(R) Celeron(TM) CPU 1400MHz 5/5/2006 5:00:54 AM||Memory: 382.52 MB physical, 728.66 MB virtual 5/5/2006 5:00:54 AM||Disk: 93.15 GB total, 12.41 GB free 5/5/2006 5:00:54 AM|rosetta@home|Computer ID: 78725; location: home; project prefs: default 5/5/2006 5:00:58 AM|rosetta@home|Deferring computation for result HBLR_1.0_1ogw_ROT_TRIALS_TRIE_CHECKPOINTS_482_2037_0 5/5/2006 7:30:59 AM|rosetta@home|Restarting result HBLR_1.0_1ogw_ROT_TRIALS_TRIE_CHECKPOINTS_482_2037_0 using rosetta version 507 5/5/2006 7:35:38 AM|rosetta@home|Unrecoverable error for result HBLR_1.0_1ogw_ROT_TRIALS_TRIE_CHECKPOINTS_482_2037_0 ( - exit code -529697949 (0xe06d7363)) 5/5/2006 7:35:38 AM|rosetta@home|Computation for result HBLR_1.0_1ogw_ROT_TRIALS_TRIE_CHECKPOINTS_482_2037_0 finished 5/5/2006 7:36:39 AM|rosetta@home|Sending scheduler request to https://boinc.bakerlab.org/rosetta_cgi/cgi 5/5/2006 7:36:39 AM|rosetta@home|Reason: To fetch work 5/5/2006 7:36:39 AM|rosetta@home|Requesting 8640 seconds of new work, and reporting 1 results 5/5/2006 7:36:48 AM|rosetta@home|Scheduler request to https://boinc.bakerlab.org/rosetta_cgi/cgi succeeded 5/5/2006 7:36:50 AM|rosetta@home|Started download of 1tul_.fasta.gz 5/5/2006 7:36:50 AM|rosetta@home|Started download of 1tul.pdb.gz 5/5/2006 7:36:52 AM|rosetta@home|Finished download of 1tul_.fasta.gz 5/5/2006 7:36:52 AM|rosetta@home|Throughput 476 bytes/sec 5/5/2006 7:36:52 AM|rosetta@home|Finished download of 1tul.pdb.gz 5/5/2006 7:36:52 AM|rosetta@home|Throughput 19178 bytes/sec 5/5/2006 7:36:52 AM|rosetta@home|Started download of 1tul_.psipred_ss2.gz 5/5/2006 7:36:52 AM|rosetta@home|Started download of aa1tul_03_05.200_v1_3.gz 5/5/2006 7:36:54 AM|rosetta@home|Finished download of 1tul_.psipred_ss2.gz 5/5/2006 7:36:54 AM|rosetta@home|Throughput 4763 bytes/sec 5/5/2006 7:36:54 AM|rosetta@home|Started download of aa1tul_09_05.200_v1_3.gz 5/5/2006 7:38:35 AM|rosetta@home|Finished download of aa1tul_03_05.200_v1_3.gz 5/5/2006 7:38:35 AM|rosetta@home|Throughput 13194 bytes/sec 5/5/2006 7:38:35 AM|rosetta@home|Started download of alltopcodes.pdat.gz 5/5/2006 7:38:37 AM|rosetta@home|Finished download of alltopcodes.pdat.gz 5/5/2006 7:38:37 AM|rosetta@home|Throughput 7279 bytes/sec 5/5/2006 7:38:37 AM|rosetta@home|Started download of allbarcodes04.bar.gz 5/5/2006 7:38:43 AM|rosetta@home|Finished download of allbarcodes04.bar.gz 5/5/2006 7:38:43 AM|rosetta@home|Throughput 9792 bytes/sec 5/5/2006 7:39:38 AM|rosetta@home|Finished download of aa1tul_09_05.200_v1_3.gz 5/5/2006 7:39:38 AM|rosetta@home|Throughput 18857 bytes/sec 5/5/2006 7:39:39 AM||request_reschedule_cpus: files downloaded 5/5/2006 7:53:10 AM||request_reschedule_cpus: process exited 5/5/2006 9:39:03 AM|rosetta@home|Starting result JUMP_ALLBARCODE04_1tul__468_8868_0 using rosetta version 507 5/5/2006 9:39:25 AM|rosetta@home|Unrecoverable error for result JUMP_ALLBARCODE04_1tul__468_8868_0 ( - exit code -164 (0xffffff5c)) 5/5/2006 9:39:25 AM||request_reschedule_cpus: process exited 5/5/2006 9:39:25 AM|rosetta@home|Computation for result JUMP_ALLBARCODE04_1tul__468_8868_0 finished 5/5/2006 9:40:28 AM|rosetta@home|Sending scheduler request to https://boinc.bakerlab.org/rosetta_cgi/cgi 5/5/2006 9:40:28 AM|rosetta@home|Reason: To fetch work 5/5/2006 9:40:28 AM|rosetta@home|Requesting 8640 seconds of new work, and reporting 1 results 5/5/2006 9:40:44 AM|rosetta@home|Scheduler request to https://boinc.bakerlab.org/rosetta_cgi/cgi succeeded 5/5/2006 9:40:46 AM|rosetta@home|Started download of 1hz6A.psipred_ss2.gz 5/5/2006 9:40:46 AM|rosetta@home|Started download of aa1hz6A03_05.400_v1_3.gz 5/5/2006 9:40:49 AM|rosetta@home|Finished download of 1hz6A.psipred_ss2.gz 5/5/2006 9:40:49 AM|rosetta@home|Throughput 309 bytes/sec 5/5/2006 9:40:49 AM|rosetta@home|Started download of frags400.txt 5/5/2006 9:41:02 AM|rosetta@home|Finished download of frags400.txt 5/5/2006 9:41:02 AM|rosetta@home|Throughput 91 bytes/sec 5/5/2006 9:41:02 AM|rosetta@home|Started download of 1hz6.pdb.gz 5/5/2006 9:41:09 AM|rosetta@home|Finished download of 1hz6.pdb.gz 5/5/2006 9:41:09 AM|rosetta@home|Throughput 1475 bytes/sec 5/5/2006 9:41:09 AM|rosetta@home|Started download of aa1hz6A09_05.400_v1_3.gz 5/5/2006 9:41:47 AM||request_reschedule_cpus: files downloaded 5/5/2006 9:42:14 AM|rosetta@home|Finished download of aa1hz6A03_05.400_v1_3.gz 5/5/2006 9:42:14 AM|rosetta@home|Throughput 12589 bytes/sec 5/5/2006 9:42:14 AM|rosetta@home|Started download of 1hz6A.fasta 5/5/2006 9:42:16 AM|rosetta@home|Finished download of 1hz6A.fasta 5/5/2006 9:42:16 AM|rosetta@home|Throughput 48 bytes/sec 5/5/2006 9:43:22 AM|rosetta@home|Finished download of aa1hz6A09_05.400_v1_3.gz 5/5/2006 9:43:22 AM|rosetta@home|Throughput 21418 bytes/sec 5/5/2006 9:43:23 AM||request_reschedule_cpus: files downloaded cheers, Jonathan 
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Robert Everly Send message Joined: 8 Oct 05 Posts: 27 Credit: 665,094 RAC: 0 |
Two 5.07s died here. resultid=19196099 died with <core_client_version>5.4.3</core_client_version> <message>Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # random seed: 1535558 # cpu_run_time_pref: 21600 # cpu_run_time_pref: 21600 # cpu_run_time_pref: 21600 # cpu_run_time_pref: 21600 # cpu_run_time_pref: 21600 ERROR:: Exit at: .dock_structure.cc line:401 </stderr_txt> and resultid=19101907 died with <core_client_version>5.4.3</core_client_version> <message>Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # random seed: 3953224 # cpu_run_time_pref: 21600 # cpu_run_time_pref: 21600 # cpu_run_time_pref: 21600 ERROR:: Exit at: .hbonds.cc line:293 </stderr_txt> These are my first errors in a long time, so keep up the good work. |
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Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0 |
Hi Rebirther and others with "1.04%" after 3 hours or so, please let them run until they go about 4 times your cpu run time preference. (If you haven't set a preference, our default is 3 hours, so let them run 12 hours.) If they're running longer, the jobs should be aborted by the watchdog, but please post here if not! I have suspend following WU: FA_CASP6_t198__470_5745_0 |
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Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0 |
Hi Jon: thanks for posting. We definitely don't want Rosetta to be dysfunctional on your PC! Can you possibly post here a link to your failed workunits? In the boinc manager, you can hit "Your results" and it will give you the links. We are now beginning a big push on our test server ralph to track down the final set of bugs in rosetta@home. The app there is getting more debugging machinery added every few days. So if any users out there are seeing repeated failures on rosetta@home (there don't seem to be many -- our error rates are low), please consider attaching your computer to ralph! Hi, |
Rebirther Send message Joined: 17 Sep 05 Posts: 116 Credit: 41,315 RAC: 0 |
Hi Rebirther and others with "1.04%" after 3 hours or so, please let them run until they go about 4 times your cpu run time preference. (If you haven't set a preference, our default is 3 hours, so let them run 12 hours.) If they're running longer, the jobs should be aborted by the watchdog, but please post here if not! Don`t worry Rhiju, I have finished this larger WU in 3h ;) |
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mmn Send message Joined: 11 Mar 06 Posts: 1 Credit: 23,115 RAC: 0 |
MODEL 1 STEP 0 cpu time : 7 min created 6 May 2006 7:14:58 UTC name AB_CASP6_t216__486_401 |
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Knorr Send message Joined: 18 Feb 06 Posts: 21 Credit: 373,953 RAC: 0 |
Got an exit code 0x1 on this WU: HBLR_1.0_1n0u_ROT_TRIALS_TRIE_CHECKPOINTS_482_4843_0 Just came out of the blue. Not while rescheduling etc. |
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Jon C Melusky Send message Joined: 29 Nov 05 Posts: 12 Credit: 191,715 RAC: 22 |
>>>Hi Jon: thanks for posting. We definitely don't want Rosetta to be dysfunctional on your PC! Can you possibly post here a link to your failed workunits? In the boinc manager, you can hit "Your results" and it will give you the links. We are now beginning a big push on our test server ralph to track down the final set of bugs in rosetta@home. The app there is getting more debugging machinery added every few days. So if any users out there are seeing repeated failures on rosetta@home (there don't seem to be many -- our error rates are low), please consider attaching your computer to ralph!>>> Hi Rhiju, Here is the link to my failed work units. Looks like I have had one Rosetta success since April 22nd. I am running XP Home. HP Presario 6000. 384 Ram. Rosetta gets 20% like all my projects do. I don't know what ralph is. I am attached to 4 of the other main BOINC projects. They run fine. Well, lately they have. (^: https://boinc.bakerlab.org/rosetta/results.php?userid=23144 cheers, Jonathan
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Moderator9 Volunteer moderator Send message Joined: 22 Jan 06 Posts: 1014 Credit: 0 RAC: 0 |
...I don't know what ralph is. I am attached to 4 of the other main BOINC projects. They run fine. Well, lately they have. (^: Ralph is the Alpha test project for Rosetta. It is located Here. Use the homepage as a URL for BOINC when it askes for a project URL during the attach process. What Rhiju is suggesting is that if you attach to Ralph we can help find out what is going wrong on your system. Also this will help find any errors on the application. Moderator9 ROSETTA@home FAQ Moderator Contact |
Snake Doctor Send message Joined: 17 Sep 05 Posts: 182 Credit: 6,401,938 RAC: 0 |
Well I don't get many errors but I have two within just a few moments of each other. Mac g4 Dual, 1GB of memory. It looked like BOINC tried to start running them before they finished downloading. here and here the errors were both - <core_client_version>5.4.9</core_client_version> <message> Couldn't start or resume: -146 </message> |
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Bones Send message Joined: 16 Sep 05 Posts: 3 Credit: 713,317 RAC: 0 |
resultid=19261039. This one hasn't yet failed, but acted strangely in that it was at 0.00% complete after 2 hours and the cpu usage was also 2% (normally 100%) even though the wu was supposedly running. I restarted boinc (5.2.13) and the progress jumped to 66.01% and now appears to be running ok. Not sure if this problem is rosetta app or boinc causing the issue, but thought i'd let you know anyway. |
Astro Send message Joined: 2 Oct 05 Posts: 987 Credit: 500,253 RAC: 0 |
Not sure if this problem is rosetta app or boinc causing the issue, but thought i'd let you know anyway. if it happens again, you might take a look at "task manager" to see what's taking up the other percentage of cpu usage. Maybe some other task was running? |
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Nightbird Send message Joined: 17 Sep 05 Posts: 70 Credit: 32,418 RAC: 0 |
Got after i rebooted my machine : (0x1) - exit code 1 (0x1) FACONTACTS_NOFILTERS_1vie__441_93_1 stderr out <core_client_version>4.32</core_client_version> <message>Fonction incorrecte. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # random seed: 3203608 # cpu_run_time_pref: 21600 </stderr_txt> Validate state Invalid https://boinc.bakerlab.org/rosetta/result.php?resultid=18716104 |
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R/B Send message Joined: 8 Dec 05 Posts: 195 Credit: 28,095 RAC: 0 |
Result ID 19329923 Name JUMP_CLOSE_CHAINBREAK_ALLBARCODE_1q7sA_SAVE_ALL_OUT_472_6930_0 Workunit 16022107 Created 6 May 2006 3:45:09 UTC Sent 6 May 2006 7:44:35 UTC Received 7 May 2006 8:15:56 UTC Server state Over Outcome Client error Client state Computing Exit status 0 (0x0) Computer ID 92884 Report deadline 20 May 2006 7:44:35 UTC CPU time 19425.453125 stderr out <core_client_version>5.2.13</core_client_version> <stderr_txt> |
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Snake Doctor Send message Joined: 17 Sep 05 Posts: 182 Credit: 6,401,938 RAC: 0 |
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Report Problems with Rosetta Version 5.07
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