Message boards : Number crunching : Report Problems with Rosetta Version 5.13
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Jose Send message Joined: 28 Mar 06 Posts: 820 Credit: 48,297 RAC: 0 |
I reported two WuS in this thread https://boinc.bakerlab.org/rosetta/forum_thread.php?id=1573 This and no other is the root from which a Tyrant springs; when he first appears he is a protector.†Plato |
Jose Send message Joined: 28 Mar 06 Posts: 820 Credit: 48,297 RAC: 0 |
A third wu concked out with a client error https://boinc.bakerlab.org/rosetta/result.php?resultid=19847593 This and no other is the root from which a Tyrant springs; when he first appears he is a protector.†Plato |
![]() Send message Joined: 19 Sep 05 Posts: 10 Credit: 1,773,393 RAC: 0 |
This isn't exactly an error but more of a cosmetic thing, but the descriptive text in the graphics doesn't wrap to the next line. For my current unit is says, "This test is looking to see whether we fold evolutionary similar proteins using the same protocol, we are ab" and it cuts off right in the middle of that last 'b'. |
frederick corse Send message Joined: 7 Oct 05 Posts: 10 Credit: 1,545,999 RAC: 0 |
running homo log abrelax homo 002_t283_505_162 . When the progam started i don't get space for RSMD on the display |
Stu D.![]() Send message Joined: 3 Mar 06 Posts: 8 Credit: 575,867 RAC: 0 |
https://boinc.bakerlab.org/rosetta/result.php?resultid=19946387 https://boinc.bakerlab.org/rosetta/result.php?resultid=19946264 |
![]() Send message Joined: 19 Sep 05 Posts: 10 Credit: 1,773,393 RAC: 0 |
I just noticed that as with 5.12, my machine is experiencing the same problem that I first reported here. I also noticed that someone else is experiencing the same problem. Perhaps this screen crashing problem is only limited to ATI gpus? I completed a 5.13 work unit on my office computer earlier today with the graphics open the whole time and experienced no screen crashes (it uses an Intel integrated gpu) For further clarification, the screen crashes don't happen during full atom relax. |
![]() Send message Joined: 19 Sep 05 Posts: 10 Credit: 1,773,393 RAC: 0 |
I just noticed that as with 5.12, my machine is experiencing the same problem that I first reported here. I also noticed that someone else is experiencing the same problem. Perhaps this screen crashing problem is only limited to ATI gpus? I completed a 5.13 work unit on my office computer earlier today with the graphics open the whole time and experienced no screen crashes (it uses an Intel integrated gpu) For further clarification, the screen crashes don't happen during full atom relax. I installed BOINC 5.4.9 and the problem still persisted. However, I think I found the cause. If I don't attempt to rotate or zoom in/out of the native protein model, my system can make it all the way through without a screen crash. I've been able to replicate this somewhat. Everytime I rotate the model with my mouse even a small amount, a screen crash does happen but a random time afterward. Interesting bug. ;-) |
Rollo Send message Joined: 2 Jan 06 Posts: 21 Credit: 106,369 RAC: 0 |
running homo log abrelax homo 002_t283_505_162 . When the progam started i don't get space for RSMD on the display That is because you are modelling a protein from the CASP7 trials. Researchers gave their results for the shape of the proteins to the CASP7 organizers, without publishing it at the moment. Now several groups try to figure the shape f the protein from the amino acid sequence without knowing the shape, which is of course the purpose for which rosetta is made. So withou the original shape no RMSD can be calculated for your models and thus you do not see see it. |
Aglarond Send message Joined: 29 Jan 06 Posts: 26 Credit: 446,212 RAC: 0 |
I think it should be mentioned in the text below models why we don't see RMSD. Now it is really confusing for people who don't know what's going on. And to say something about Kerwins problem.. few days ago I had problems running one application on computer with ATI Radeon7000 .. after contacting the support staff they told me, that this graphic card model has problems with OpenGL. I had to replace it. |
![]() ![]() Send message Joined: 30 Dec 05 Posts: 1755 Credit: 4,690,520 RAC: 0 |
why we don't see RMSD. ...I'll take a stab at explaining this. The Rosetta project is trying to invent a tool. And SOME of what they want to tool to do, there are already tools that do the same thing. Many of the tests we've run in the past on Rosetta are comparisons of a new Rosetta tool with the existing known tools. RSMD is a measure of how close the current Rosetta version is coming to the results of other known tools. Think of it this way, if you want to invent a new compass for navigation, you will test it with other available methods of navigation. And so RSMD is sort of like a measure of how far away from your destination your new compass has taken you. With the CASP, the precise destination is not known by the participants. It is like a rally race, "drive at 5mph for 3min, then turn left... go 3 miles at 30mph..." and in order to "win", you have to end up at the right location... AND at the proper time! And so there is no existing tool to use for comparison. RSMD is the comparison to the existing tools used to determine protein structures. Add this signature to your EMail: Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might! https://boinc.bakerlab.org/rosetta/ |
akma Send message Joined: 11 May 06 Posts: 8 Credit: 159,246 RAC: 0 |
i've had no problems with the standard work unites using 5.13. However when i get a clasp7 one it has a problem that crashes and exites. This only happens when the screensaver comes on. if i stop it from coming on it finishes with no problems at all. but if i see the screensaver for more than a few minutes and it happens. any ideas? |
jjgb10 Send message Joined: 29 Sep 05 Posts: 21 Credit: 6,152,959 RAC: 0 |
Every time my new laptop runs a Rosetta workunit, it finished at 100% with a computation error. I also get an error from windows saying that Rosetta 5.13 crashed. Here is the message from BOINC saying the error. - exit code -1073741811 (0xc000000d) Please help me fix this. I want to run Rosetta but it is not working. I am running it on an acer TravelMate 4670. You can find the specs on google. It is the faster version with the T2500 processor. I have BOINC only setup to use one processor. |
jjgb10 Send message Joined: 29 Sep 05 Posts: 21 Credit: 6,152,959 RAC: 0 |
Also, here is the address where you can look at the workunits and their error messages. https://boinc.bakerlab.org/rosetta/results.php?hostid=217745 |
akma Send message Joined: 11 May 06 Posts: 8 Credit: 159,246 RAC: 0 |
i'm currently using a geforce 4600. |
akma Send message Joined: 11 May 06 Posts: 8 Credit: 159,246 RAC: 0 |
i'm currently using a geforce 4600. thank you very much that has fixed the problem for me. |
Stu D.![]() Send message Joined: 3 Mar 06 Posts: 8 Credit: 575,867 RAC: 0 |
5/12/2006 11:08:59 PM|rosetta@home|Unrecoverable error for result HOMOLOG_ABRELAX_hom007_t283__505_10758_0 ( - exit code -1073741811 (0xc000000d)) https://boinc.bakerlab.org/rosetta/result.php?resultid=20069514 Boinc 5.4.9 Stu |
![]() Send message Joined: 18 Sep 05 Posts: 2 Credit: 3,893 RAC: 0 |
My results: https://boinc.bakerlab.org/rosetta/results.php?hostid=219533 |
jjgb10 Send message Joined: 29 Sep 05 Posts: 21 Credit: 6,152,959 RAC: 0 |
Yes, you were right. Upgrading to the new BOINC version solved my problem. I didn't know it was out today. I checked every other day for the last 3 months and it is finally out now. Thanks |
![]() Send message Joined: 19 Sep 05 Posts: 403 Credit: 537,991 RAC: 0 |
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![]() Send message Joined: 19 Sep 05 Posts: 403 Credit: 537,991 RAC: 0 |
There seem to be alot of info in the error message :) Anders n ![]() |
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Number crunching :
Report Problems with Rosetta Version 5.13
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