Message boards : Number crunching : Report Problems with Rosetta Version 5.22
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Feet1st Send message Joined: 30 Dec 05 Posts: 1755 Credit: 4,690,520 RAC: 0 |
Tony, do you have JP's EMail address? The French guy who always needs new Rosetta .exe EMailed? Could you ask him to see if he can help with this post by French person on Q&A boards? The main parts that translated properly were that he's poor, alone and in a wheelchair. Perhaps JP can read between the lines better than the translation website. Add this signature to your EMail: Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might! https://boinc.bakerlab.org/rosetta/ |
Astro Send message Joined: 2 Oct 05 Posts: 987 Credit: 500,253 RAC: 0 |
Tony, do you have JP's EMail address? The French guy who always needs new Rosetta .exe EMailed? Could you ask him to see if he can help with this post by French person on Q&A boards? The main parts that translated properly were that he's poor, alone and in a wheelchair. Perhaps JP can read between the lines better than the translation website. Mail sent |
Stwato Send message Joined: 11 Jan 06 Posts: 150 Credit: 655,634 RAC: 0 |
Another question quickly, efficiently and comprehensivly answered! Thanks a lot guys. Stwato |
Ian Send message Joined: 14 Apr 06 Posts: 29 Credit: 326,863 RAC: 577 |
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Robert Everly Send message Joined: 8 Oct 05 Posts: 27 Credit: 665,094 RAC: 0 |
Here's one that went crazy. resultid 23976562 On this host hostid 214416 This host does nothing but crunch. Another host did complete the WU sucessfully. <core_client_version>5.4.9</core_client_version> <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> X_NB neighbors increase MAX_NB in param.cc allatom: 1434 res: 95 atom: 1 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1437 res: 95 atom: 3 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1437 res: 95 atom: 3 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1437 res: 95 atom: 3 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1437 res: 95 atom: 3 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1437 res: 95 atom: 3 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1450 res: 95 atom: 4 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1450 res: 95 atom: 4 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1450 res: 95 atom: 4 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1450 res: 95 atom: 4 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1450 res: 95 atom: 4 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1438 res: 95 atom: 5 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1438 res: 95 atom: 5 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1438 res: 95 atom: 5 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1438 res: 95 atom: 5 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1438 res: 95 atom: 5 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1434 res: 95 atom: 1 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1434 res: 95 atom: 1 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1434 res: 95 atom: 1 has more than MAX_NB neighbors *snipped a lot of lines* allatom: 1567 res: 103 atom: 4 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1567 res: 103 atom: 4 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1550 res: 103 atom: 5 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1550 res: 103 atom: 5 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1550 res: 103 atom: 5 has more than MAX_NB neighbors increase MAX_NB in param.cc allatom: 1550 res: 103 atom: 5 has more than MAX_NB neighbors Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x0061B538 read attempt to address 0x790C3DE3 Engaging BOINC Windows Runtime Debugger... |
Martin P. Send message Joined: 26 May 06 Posts: 38 Credit: 168,333 RAC: 0 |
Problems with download of WUs: Either now work or heavily overcommitted. https://boinc.bakerlab.org/rosetta/forum_thread.php?id=1703 Hi, The client errors are there because I have other projects running and therefore manually aborted these Work-Units so that the other project get their share as well. Otherwise Rosetta would have taken over my computers exclusively for several days. I followed your advice and let it run for several days without any interfearance. I did not get any new work for 5 days but tonight it downloaded 30 work-units and is overcommitted again! |
Ian Send message Joined: 14 Apr 06 Posts: 29 Credit: 326,863 RAC: 577 |
Blimey. Whole flurry of errors. All today (well, yesterday - 16 June). Had nothing like this for weeks. https://boinc.bakerlab.org/rosetta/result.php?resultid=24427279 https://boinc.bakerlab.org/rosetta/result.php?resultid=24460877 https://boinc.bakerlab.org/rosetta/result.php?resultid=24463664 https://boinc.bakerlab.org/rosetta/result.php?resultid=24495408 https://boinc.bakerlab.org/rosetta/result.php?resultid=24513042 Ian Cundell, St Albans, UK |
Lee Carre Send message Joined: 6 Oct 05 Posts: 96 Credit: 79,331 RAC: 0 |
https://boinc.bakerlab.org/rosetta/result.php?resultid=24571715 i was viewing the graphics window at the time it failed incase that makes a difference Want to search the BOINC Wiki, BOINCstats, or various BOINC forums from within firefox? Try the BOINC related Firefox Search Plugins |
Tigher Send message Joined: 16 Jun 06 Posts: 5 Credit: 5,814 RAC: 0 |
I have just joined the project. On one PC of the 9 WUs it has been sent it has successfully processed 5 but errored out on 4. from my log: 17/06/2006 04:25:04 Unrecoverable error for result t299__CASP7_JUMPRELAX_SAVE_ALL_OUT_BARCODE_cterm2_nohelix3_hom001__681_83011_0 ( - exit code -1073741819 (0xc0000005)) Clues or advice? A different unit to that above but some debug info to help devs. https://boinc.bakerlab.org/rosetta/result.php?resultid=24466158 |
Jimi@0wned.org.uk Send message Joined: 10 Mar 06 Posts: 29 Credit: 335,252 RAC: 0 |
First error ever on this machine (31,000 credit): https://boinc.bakerlab.org/rosetta/workunit.php?wuid=19785224 stderr out <core_client_version>5.5.0</core_client_version> <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # random seed: 3706611 # cpu_run_time_pref: 14400 # cpu_run_time_pref: 14400 ERROR:: Exit at: .dock_structure.cc line:401 </stderr_txt> btw [BOINCUK]Tigher, (0xc0000005) is usually a memory error, in my experience. |
Tigher Send message Joined: 16 Jun 06 Posts: 5 Credit: 5,814 RAC: 0 |
Gulp! Hmmm thanks. |
Bandit Send message Joined: 21 May 06 Posts: 12 Credit: 197,197 RAC: 0 |
Another problem - looks the same from this end as the other ones I had. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=20802010 When I leave from working on the computer, I'll exit IE to see if that helps. Bandit's Mom |
Leonard Kevin Mcguire Jr. Send message Joined: 13 Jun 06 Posts: 29 Credit: 14,903 RAC: 0 |
https://boinc.bakerlab.org/rosetta/hosts_user.php?userid=94664 I have been accumulating computation errors lately. |
tralala Send message Joined: 8 Apr 06 Posts: 376 Credit: 581,806 RAC: 0 |
https://boinc.bakerlab.org/rosetta/result.php?resultid=24638007 This WU created about three good models with energy minima between -200 and -300. then it failed to do more good models which each succeeding model completing within minutes and always the same energy minimum of about -30. Watching on the graphics showed a stretched protein where no folding was achieved. I "aborted" the model the soft way with 6 restarts of BOINC (to prevent sending out the same WU). I watched such WU in the past. Perhaps there is a pattern. |
Feet1st Send message Joined: 30 Dec 05 Posts: 1755 Credit: 4,690,520 RAC: 0 |
This WU created about three good models with energy minima between -200 and -300. then it failed to do more good models which each succeeding model completing within minutes and always the same energy minimum of about -30. I for one have been HOPING to see WUs that would act like that. If you knew that a -300 was possible, and you are sitting at a -30, there are cases where it might be SMART to bail on this one and invest the time in pursuing something with more potential. I don't know that this is what happened in your case, I'll leave that for the project team to assess. I just wanted to point out that it is the TYPE of thing that I think we'll see more of as the algorythm gets smarter. Add this signature to your EMail: Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might! https://boinc.bakerlab.org/rosetta/ |
tralala Send message Joined: 8 Apr 06 Posts: 376 Credit: 581,806 RAC: 0 |
This WU created about three good models with energy minima between -200 and -300. then it failed to do more good models which each succeeding model completing within minutes and always the same energy minimum of about -30. I agree! Using previous result for "pruning" decision is an idea that for a long time crossed my mind. I'm a bit in chess engine programming and in these engines a lot of "pruning" is done in positions where one side is just too worse to have any chance of reaching the current score with any move. However in the case reported it was most certainly something different, since the models finished successively in a few minutes without really folding the protein (it was stretched in the graphics) and with always the same score. In the end I had over 150 models of which only three had not been "aborted". |
Carlos_Pfitzner Send message Joined: 22 Dec 05 Posts: 71 Credit: 138,867 RAC: 0 |
stuck at 74.101% Rosetta 5.22 Windows 0.0000% of CPU usage Thus, aborted by hand after 3 hours of IDLE time! https://boinc.bakerlab.org/rosetta/result.php?resultid=24659040 Thanks Click signature for global team stats |
rriggs Send message Joined: 5 Jun 06 Posts: 5 Credit: 48,672 RAC: 0 |
For the past week or so I've been getting 2-3 crashes per day. The failed work units show up as "Compute Error" with no credit. Do I need to report this? Or will the appropriate party see these errors and be able to deal with them on their own? |
Feet1st Send message Joined: 30 Dec 05 Posts: 1755 Credit: 4,690,520 RAC: 0 |
Do I need to report this? Or will the appropriate party see these errors and be able to deal with them on their own? It is "HELPFUL" if you report them. It gives the opportunity to ask you questions about your computing environment so they might learn more about the system that's seeing the failure. It is not "required". Credit for failed WUs is issued once the daily credit run is made. You will see this when you display the WU details... not on the WU listing. Like this one for example. It looks like most of them were ended by the "watchdog". One was a -107 error (which is something that's been under review for a while already). The watchdog is trying to assure your computer doesn't get stuck in an unexpected loop on a work unit. If it notices no progress on a work unit in 5 restarts, then it ends it. Do you restart this computer frequently? Or have a number of other projects running in BOINC? If you would, go to your General Preferences, and let us know what you have set for "Switch between applications every...minutes", and for "Leave applications in memory while preempted?". And is Rosetta your only BOINC project? Add this signature to your EMail: Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might! https://boinc.bakerlab.org/rosetta/ |
anders n Send message Joined: 19 Sep 05 Posts: 403 Credit: 537,991 RAC: 0 |
A crash. https://boinc.bakerlab.org/rosetta/result.php?resultid=24876847 It happend when i was shutting down grafics window. Anders n |
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Report Problems with Rosetta Version 5.22
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