Anyone working on a FreeBSD port for Rosetta?

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savthe

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Message 61536 - Posted: 2 Jun 2009, 7:07:40 UTC
Last modified: 2 Jun 2009, 7:08:04 UTC

by the way, is there a minirosetta source code? It would be easier to compile it on freebsd.
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savthe

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Message 61546 - Posted: 2 Jun 2009, 17:31:38 UTC

never mind. Crunching for folding@home now. Linux client runs ok and its simplier than boinc_client.
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Dotsch
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Message 61547 - Posted: 2 Jun 2009, 20:45:32 UTC - in response to Message 61536.  
Last modified: 2 Jun 2009, 20:48:55 UTC

by the way, is there a minirosetta source code? It would be easier to compile it on freebsd.

No. So far I know It's closed source. If it waould be open source I had still ported Rosetta to many platforms as posible, as I have done it for SETI, SIMAP and other projects.

Btw. SIMAP and SETI has also native FreeBSD applications...
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Dotsch
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Message 61548 - Posted: 2 Jun 2009, 20:48:08 UTC - in response to Message 61472.  

Still not successfull:
30-May-2009 16:20:02 [rosetta@home] Starting lr5_D_chbond_05_run2_rlbn_1opd_SAVE_ALL_OUT_NATIVE_NOCON_12601_185_1
30-May-2009 16:20:02 [rosetta@home] Starting task lr5_D_chbond_05_run2_rlbn_1opd_SAVE_ALL_OUT_NATIVE_NOCON_12601_185_1 using minirosetta version 171
30-May-2009 16:20:06 [rosetta@home] Computation for task lr5_D_chbond_05_run2_rlbn_1opd_SAVE_ALL_OUT_NATIVE_NOCON_12601_185_1 finished
30-May-2009 16:20:06 [rosetta@home] Output file lr5_D_chbond_05_run2_rlbn_1opd_SAVE_ALL_OUT_NATIVE_NOCON_12601_185_1_0 for task lr5_D_chbond_05_run2_rlbn_1opd_SAVE_ALL_OUT_NATIVE_NOCON_12601_185_1 absent

By some reason minirosetta doesn't run or just exits on start. Although i don't see any crash messages.


I have checked your results. Rosetta Beta works fine.

But for the Minirosetta application the file minirosetta_database.zip is missing. You can manualy download it and put it to the projects/boinc.bakerlab_rosetta/ directory. After this I think it should work.
If not the app_info.xml must be adujsted. But I will test this, too.
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savthe

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Message 61556 - Posted: 3 Jun 2009, 6:40:18 UTC

Ah, i see where you looking now. I didn't know about these logs. I'll try rosetta again later. If my first crunches for folding@home on 32 & 64-bit BSDs will fine, it'll just remove a big headache of setting up rosetta on freebsd =)

Yep, i know about seti, simap, milkyway, einstein, but simap is always lacking work units and for the seti, i'm trying to participate to projects which can give useful results. Imo there is no practical sense in knowing if the green men exist, or not. I'm running rosetta and docking @home on windows machines and, if i'll be successfull, folding@home on freebsd.

Thank you very much for your help.
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emuman100

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Message 63396 - Posted: 19 Sep 2009, 6:58:21 UTC

I'm trying to get the minirosetta application running under freebsd too. Now, tasks do not finish, and it's because minirosetta needs minirosetta_database.zip I'm using the latest version, 1.97. I downloaded minirosetta_database_rev32257.zip, renamed it to minirosetta_database.zip and put it in the boinc.bakerlab.org_rosetta directory with the apps that had brandelf -t Linux applied to them. My latest task https://boinc.bakerlab.org/rosetta/result.php?resultid=281545452 shows it complains about the missing file minirosetta_database.zip. Does it need to be the original minirosetta_database_rev32257.zip? minirosetta_database.zip is not working, and I've reached my daily quota of two tasks per day, so I have to wait and see if it will work. Does anyone know what the minirosetta database zip file should be named with version 1.97 of minirosetta?

Thanks.
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emuman100

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Message 63397 - Posted: 19 Sep 2009, 7:24:41 UTC

19-Sep-2009 03:10:49 [rosetta@home] Starting lr8_wo_dun_run01_rlbd_1ten_IGNORE_THE_REST_DECOY_14737_359_0
19-Sep-2009 03:10:49 [rosetta@home] Starting task lr8_wo_dun_run01_rlbd_1ten_IGNORE_THE_REST_DECOY_14737_359_0 using minirosetta version 197
19-Sep-2009 03:10:52 [rosetta@home] Computation for task lr8_wo_dun_run01_rlbd_1ten_IGNORE_THE_REST_DECOY_14737_359_0 finished
19-Sep-2009 03:10:52 [rosetta@home] Output file lr8_wo_dun_run01_rlbd_1ten_IGNORE_THE_REST_DECOY_14737_359_0_0 for task lr8_wo_dun_run01_rlbd_1ten_IGNORE_THE_REST_DECOY_14737_359_0 absent

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emuman100

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Message 63414 - Posted: 21 Sep 2009, 8:19:11 UTC

Whether minirosetta_database.zip or minirosetta_database_rev32257.zip, neither seems to work. My task ID still says minirosetta_database.zip is still missing. I just cannot get what is wrong. I really want this to work. Anyone have any idea what might be wrong? My latest task id is https://boinc.bakerlab.org/rosetta/result.php?resultid=282251446

Thanks.
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Mod.Sense
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Message 63417 - Posted: 21 Sep 2009, 14:32:46 UTC

Is it possible the zip file was modified during transfer to the FreeBSD platform? Perhaps it is actually having trouble locating a file within the zip because it has been corrupted.
Rosetta Moderator: Mod.Sense
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emuman100

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Message 63429 - Posted: 22 Sep 2009, 21:33:13 UTC

Setting WU description ...

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 97
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

It looks for minirosetta_database.zip, since it can't find it, it seems to think the task is completed and tries to gzip the default.out file and fails.

I'm not sure how to troubleshoot this.
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Mod.Sense
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Message 63433 - Posted: 23 Sep 2009, 15:39:25 UTC

You might assume that your task requires the highest numbered database file, download the current one from here and compare with the one you've got.
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emuman100

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Message 63456 - Posted: 26 Sep 2009, 8:08:00 UTC

I did download the highest numbered minirosetta_database_XXXXX.zip I'm not sure exactly what it's looking for, or if it uses some hard-coded path. It won't output anything to the console, either. rosetta_beta works fine though, no errors at all.
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Questions and Answers : Unix/Linux : Anyone working on a FreeBSD port for Rosetta?



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